IGVFFI3300ILWW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2873YXDP(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP018_G3_P063_L006_R1

md5sum

e2b8ebe29b0224c6cb81bca720b3cc49

Content MD5sum

b9df3d745d7ba0401ea34c3e0ed753f5

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP018_G3_L003_P063_S31_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60611669

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0275PBUR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples