IGVFFI3299BGMI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2419ECQE(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G2_P051_L005_I1

md5sum

e377edcec993d6a53550ae0ac0fbb765

Content MD5sum

e5e4df86db2878f948e1fa051b76eeff

File Size

512 MB

Submitted File Name

Multiome_ATAC_RP001_G2_L002_P051_S22_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

73340742

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7915KUKE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples