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INDEXED
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SequenceFile
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IGVFFI3298AYTI
IGVFFI3298AYTI
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9809VXKU
(single-nucleus ATAC-seq (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_X041_G3_P041_L002_R2
md5sum
fb1a8ded755aea3b124442fb62d17c68
Content MD5sum
928291ec50185cebc4ef0ffd25c092f3
File Size
804 MB
Submitted File Name
Multiome_ATAC_X041_G3_L003_P041_S13_L002_R2_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJTLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
24
Read Count
46282550
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5674WWIP
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF