IGVFFI3296LCQZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0360VRTX(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G4_P060_L006_I1

md5sum

8b4f511548c88b5adb1539ba28bd25c5

Content MD5sum

79902b0ed635f69b814977bdc342a994

File Size

344 MB

Submitted File Name

Multiome_RNA_RP012_G4_L004_P060_S36_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58217627

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1205XBBX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples