IGVFFI3295FGGV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8468YHXG(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G2_P032_L004_R1

md5sum

4f770083f2a35f5b12a4a03d5cbe2a89

Content MD5sum

eb9327abf52d265f13c5af3ccac2d4bb

File Size

16 GB

Submitted File Name

Multiome_RNA_X031_G2_L002_P032_S44_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

244261376

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3376RRIH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples