IGVFFI3282LJWD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6459RETS(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X031_G2_P031_L001_R3

md5sum

f98bb82a980e9d34f95106abd65ab98a

Content MD5sum

62132a791b38785abda9770d05c42f68

File Size

13 GB

Submitted File Name

Multiome_ATAC_X031_G2_L002_P031_S8_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

244906988

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3376RRIH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples