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INDEXED
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SequenceFile
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IGVFFI3281ATGJ
IGVFFI3281ATGJ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0332EHYL
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP004_G3_P054_L006_I1
md5sum
192917a70131dd9521c480e25a241d9f
Content MD5sum
8d48e11e60819edaf66af10179b8ce9d
File Size
237 MB
Submitted File Name
Multiome_RNA_RP004_G3_L003_P054_S30_L006_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJGLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
43537341
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5358MDTC
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples