IGVFFI3281AJMQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0549PHUZ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G2_P053_L003_R2

md5sum

865f90cb7e36325aec9e2fbed08e6bb9

Content MD5sum

3291dac3255430c3ea47a17baa9ad377

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_RP004_G2_L002_P053_S10_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

85722805

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9557IMSU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples