IGVFFI3272OHPB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5426TEJZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G7_P065_L005_R1

md5sum

f945cdd49b206bc35d193ee547fa2059

Content MD5sum

c02c37646d8fbbe1a4108050da254020

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_X050_G7_L007_P065_S37_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67968042

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5030LPJJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples