IGVFFI3258ZIPG

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI3258ZIPG/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI3258ZIPG",
10    "aliases": [
11        "jesse-engreitz:THP1-PPIF_promoter_lentiMPRA_BioRep1_DNA_BarcodeSequencing_R2"
12    ],
13    "assay_titles": [
14        "lentiMPRA"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011972/",
19        "component": "functional characterization"
20    },
21    "content_md5sum": "b711cc3b0dc509efcbd5ea79f1da35eb",
22    "content_type": "reads",
23    "controlled_access": false,
24    "creation_timestamp": "2024-11-23T01:09:01.750792+00:00",
25    "description": "UMI Read",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/auxiliary-sets/IGVFDS7292KWHE/",
30        "@type": [
31            "AuxiliarySet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS7292KWHE",
36        "file_set_type": "quantification DNA barcode sequencing",
37        "samples": [
38            {
39                "@id": "/in-vitro-systems/IGVFSM6934LXGU/",
40                "@type": [
41                    "InVitroSystem",
42                    "Biosample",
43                    "Sample",
44                    "Item"
45                ],
46                "accession": "IGVFSM6934LXGU",
47                "classifications": [
48                    "cell line"
49                ],
50                "sample_terms": [
51                    {
52                        "@id": "/sample-terms/EFO_0001253/",
53                        "status": "released",
54                        "term_name": "THP-1"
55                    }
56                ],
57                "status": "preview",
58                "summary": "Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library",
59                "taxa": "Homo sapiens"
60            }
61        ],
62        "status": "preview",
63        "summary": "quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus"
64    },
65    "file_size": 69746841,
66    "gene_list_for": [],
67    "href": "/sequence-files/IGVFFI3258ZIPG/@@download/IGVFFI3258ZIPG.fastq.gz",
68    "illumina_read_type": "I1",
69    "input_file_for": [
70        "/tabular-files/IGVFFI7721GQHJ/"
71    ],
72    "integrated_in": [],
73    "lab": {
74        "@id": "/labs/jesse-engreitz/",
75        "title": "Jesse Engreitz, Stanford"
76    },
77    "loci_list_for": [],
78    "maximum_read_length": 16,
79    "md5sum": "d5bb11e99f9facc6784a6b69bc98ceec",
80    "mean_read_length": 16,
81    "minimum_read_length": 16,
82    "quality_metrics": [],
83    "read_count": 4072681,
84    "s3_uri": "s3://igvf-files/2024/11/23/4ceb36a1-11aa-49a0-a091-941a4b95ffda/IGVFFI3258ZIPG.fastq.gz",
85    "schema_version": "15",
86    "seqspecs": [],
87    "sequencing_platform": {
88        "@id": "/platform-terms/EFO_0008566/",
89        "status": "released",
90        "term_name": "Illumina NextSeq 550"
91    },
92    "sequencing_run": 1,
93    "status": "preview",
94    "submitted_by": {
95        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
96        "title": "Michael Montgomery"
97    },
98    "submitted_file_name": "PPIF3_R1_DNA_S16_R2_001.fastq.gz",
99    "summary": "I1 reads from sequencing run 1",
100    "upload_status": "validated",
101    "uuid": "4ceb36a1-11aa-49a0-a091-941a4b95ffda"
102}