IGVFFI3256HTJA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8307GMHR(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X036_G1_P035_L003_R1

md5sum

8e4320cbfa7f2ad66c49aac7a00ff433

Content MD5sum

be10ba334be3497c3d2e07f7a06a598d

File Size

11 GB

Submitted File Name

Multiome_ATAC_X036_G1_L001_P035_S41_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

198978682

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9323AIRS

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples