IGVFFI3256CYAF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0455VVOE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G7_P053_L001_R1

md5sum

352abf7da1d8bcecb587a4ea83aeec74

Content MD5sum

6d82f17a0bcb5da3e8316b9753b4a845

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP004_G7_L007_P053_S15_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60022286

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1427BZIP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples