IGVFFI3254FJDP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7798YHKL(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G5_P025_L001_I1

md5sum

491e8e02d53bd43ca667dd81d39f1f9f

Content MD5sum

af84354d68c6564235c2fd446f3c9b6f

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_X026_G5_L005_P025_S6_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

135632711

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1625HXVD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples