IGVFFI3246LHOZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9058STTC(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G4_P057_L002_R3

md5sum

fdcd7f45cca98164d6949ca5f9a23143

Content MD5sum

1ab9d645af2ade580b06a6ebe45bfa1e

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP009_G4_L004_P057_S12_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50058492

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9386ETNP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples