{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI3222LIRY/",
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"File",
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],
"accession": "IGVFFI3222LIRY",
"aliases": [
"charles-gersbach:measurement-set-crispra-region3-0umET1-ipsc-cm-targeted-hicar-rep1-R2"
],
"assay_titles": [
"HiCAR"
],
"audit": {},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"content_md5sum": "18eb549338b1e88453b6dedae97c1e90",
"content_type": "reads",
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"creation_timestamp": "2024-10-23T19:29:28.574248+00:00",
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"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS7179VEDQ/",
"accession": "IGVFDS7179VEDQ",
"file_set_type": "experimental data",
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{
"@id": "/in-vitro-systems/IGVFSM1098IEON/",
"accession": "IGVFSM1098IEON",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
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"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library",
"targeted_sample_term": {
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"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus"
},
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"gene_list_for": [],
"href": "/sequence-files/IGVFFI3222LIRY/@@download/IGVFFI3222LIRY.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [
"/matrix-files/IGVFFI4219FMVM/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
"loci_list_for": [],
"maximum_read_length": 100,
"md5sum": "8241151773256bab0a333edaca6b16f0",
"mean_read_length": 100,
"minimum_read_length": 100,
"read_count": 22257491,
"release_timestamp": "2024-12-13T19:43:45.600696+00:00",
"s3_uri": "s3://igvf-files/2024/10/23/0cd49fe6-9170-45dc-bee6-0d7470a321e3/IGVFFI3222LIRY.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "NextSeq 1000/2000 P2 Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0010963/",
"status": "released",
"term_name": "Illumina NextSeq 2000"
},
"sequencing_run": 4,
"status": "released",
"submitted_by": {
"@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
"title": "Ruhi Rai"
},
"submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispra_human/crispra_hicar_human_fastq/H_vp64_r2_TA448_1_noET1_ds.a267deb0259a472ea22e9d1d806bfd1e/H_vp64_r2_TA448_1_noET1_S3_L001_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 4",
"upload_status": "validated",
"uuid": "0cd49fe6-9170-45dc-bee6-0d7470a321e3"
}