{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI3221ZEPY/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI3221ZEPY",
"aliases": [
"ali-mortazavi:igvfB01_13H_lig-ss_5.pod5"
],
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"content_type": "Nanopore reads",
"controlled_access": false,
"creation_timestamp": "2024-04-30T19:44:37.671223+00:00",
"externally_hosted": false,
"file_format": "pod5",
"file_set": {
"@id": "/measurement-sets/IGVFDS9445YYVB/",
"accession": "IGVFDS9445YYVB",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2294BOOU/",
"accession": "IGVFSM2294BOOU",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq"
},
"file_size": 102699571712,
"flowcell_id": "FAW39354",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI3221ZEPY/@@download/IGVFFI3221ZEPY.pod5",
"input_file_for": [
"/sequence-files/IGVFFI9935UOGM/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"loci_list_for": [],
"md5sum": "094e8a491606743d33553461a99988ce",
"release_timestamp": "2024-05-08T23:38:44.597115+00:00",
"s3_uri": "s3://igvf-files/2024/04/30/515a1541-8417-45bc-8fc5-e3451317661d/IGVFFI3221ZEPY.pod5",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "ONT Ligation Sequencing Kit V14",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008633/",
"status": "released",
"term_name": "ONT GridION X5"
},
"sequencing_run": 5,
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_b01/nanopore/igvfb01_13H_lig-ss_5.pod5",
"summary": "Nanopore reads from sequencing run 5",
"upload_status": "validated",
"uuid": "515a1541-8417-45bc-8fc5-e3451317661d"
}