IGVFFI3217EVSP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3080TIMY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X032_G1_P031_L003_R3

md5sum

b9518ffb0e91212193f6a0cc1b9a309d

Content MD5sum

977c9e2fc5289b51ff7665323848b6ae

File Size

15 GB

Submitted File Name

Multiome_ATAC_X032_G1_L001_P031_S37_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

285011969

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6835GLQE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples