IGVFFI3216FRIM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7206VCGJ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X033_G3_P034_L002_I1

md5sum

2b0ed9e6cc57e6fe9c7fb9cba6497580

Content MD5sum

179d489c203c00f1de60af14dbd56e8a

File Size

1.5 GB

Submitted File Name

Multiome_RNA_X033_G3_L003_P034_S19_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

204424279

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9145NGZF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples