IGVFFI3216ESMH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8611TPMB(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP011_G6_P060_L006_R1

md5sum

4bfbc23380e9695ba5ab55b97af13d36

Content MD5sum

46e9d13cb58fc5716b11ae6e2782df60

File Size

1.6 GB

Submitted File Name

Multiome_RNA_RP011_G6_L003_P060_S27_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

83450224

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6926MVZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples