IGVFFI3216BRTI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8948WYQH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G8_P041_L004_R1

md5sum

dbd4fd3e0fce84eda106b783a6dd8bb8

Content MD5sum

8ec5b3d5e23cea8ce6fd9fe8ad5ea69d

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_X040_G8_L008_P041_S10_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

73331617

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7148SYPE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples