IGVFFI3214GPBG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2090MMXQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X012_G2_P009_L001_R1

md5sum

3894295232888faacca938c1330252f9

Content MD5sum

d3121fc28aaf20e067f4af7dbd765f17

File Size

8.6 GB

Submitted File Name

Multiome_ATAC_X012_G2_L002_P009_S12_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

271505864

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7828IXBW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples