IGVFFI3211JRDE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8030DHLN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP021_G5_P067_L004_R1

md5sum

4b858f0ebd607706608d00f78e95f4f0

Content MD5sum

9f070bac3825919ed4de99d134274cb5

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP021_G5_L005_P067_S3_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

64676019

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3191ZJBV

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease; ... and 14 more samples