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INDEXED
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SequenceFile
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IGVFFI3191SJVL
IGVFFI3191SJVL
released
validated
Json view
File Set
IGVFDS6298OKGJ
(single-cell ATAC-seq (SHARE-seq))
Summary
I1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-dss05_prim_5k_ATAC.barcode.fastq.gz
md5sum
81d361d811527139e5ce160fb98e6c52
Content MD5sum
34efeea8620eb480ea002db485629c04
File Size
1.0 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/barcode-file/dss05_prim_5k_ATAC.barcode.fastq.gz
Checkfiles Version
v19
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
32
Read Count
59413292
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM0354RWOF
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7897KFLF
yaml
seqspec
seqspec of IGVFFI0623ATSQ, IGVFFI4523ADEB, IGVFFI3191SJVL
Jason Buenrostro, Broad
1.2 KB
validated