IGVFFI3171XFTY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6455YIYD(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G1_P057_L002_R3

md5sum

561419c75095423e4948c1f6098f8244

Content MD5sum

341d5b67123feed31d0007047303c8b8

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_RP009_G1_L001_P057_S9_L002_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

38015435

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3842WIDQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples