IGVFFI3168OQWV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3484DNVB(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP011_G5_P060_L005_I2

md5sum

94bdcad649b18e115dca71562fe8ae2b

Content MD5sum

393ae67634d641e2c1e2dfad82f26775

File Size

600 MB

Submitted File Name

Multiome_RNA_RP011_G5_L004_P060_S28_L005_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

86172874

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0643EUKR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples