IGVFFI3166CBGJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9492OFMM(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP020_G3_P065_L006_I1

md5sum

df86c035707f74172365bb9711bf75b9

Content MD5sum

c705f9f0765870e5fc70a5bb98fef9f7

File Size

442 MB

Submitted File Name

Multiome_ATAC_RP020_G3_L003_P065_S21_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58588748

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9011XOSL

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (male, 84 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples