IGVFFI3145CAPI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8196BIHW(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X038_G7_P040_L004_I1

md5sum

d90e578e2970b9403e83348ad3ae692c

Content MD5sum

fd98de976587587bcb5129ab4278f487

File Size

1.7 GB

Submitted File Name

Multiome_RNA_X038_G7_L007_P040_S21_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

256153583

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6450TAPI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples