IGVFFI3141LMMO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3718PAFU(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X014_G7_P014_L002_R1

md5sum

f2007804b18c1766fc04c0183fd92b19

Content MD5sum

88fae8b708285766a93b9a69dcdc008e

File Size

5.0 GB

Submitted File Name

Multiome_RNA_X014_G7_L007_P014_S19_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

237713283

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3915PNAB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples