IGVFFI3125NGDI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3220SCZZ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X023_G4_P021_L001_R3

md5sum

1c4bbdc2da8ab0ce4ea5d877868bfac7

Content MD5sum

67b20b2375955aba267bf926a361b823

File Size

4.6 GB

Submitted File Name

Multiome_ATAC_X023_G4_L004_P021_S10_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

141361526

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2836BQUP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples