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INDEXED
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SequenceFile
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IGVFFI3120NAZF
IGVFFI3120NAZF
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0111NTYK
(single-nucleus ATAC-seq (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_X035_G1_P035_L003_R1
md5sum
631ff078c20692d7cc9a80ff0f8468af
Content MD5sum
82272669f89e6884ac1e0b6c8b26a586
File Size
11 GB
Submitted File Name
Multiome_ATAC_X035_G1_L001_P035_S33_L003_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H2WFTDSX7
Lane
3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
100
Read Count
200083449
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7804QSQN
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples