IGVFFI3109WHBA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0925GEIE(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G4_P055_L003_I1

md5sum

8e92af93cf7584edb2840b4b90e9c9d0

Content MD5sum

12399012c926fd6139e1a4e5daf5abd1

File Size

496 MB

Submitted File Name

Multiome_ATAC_RP007_G4_L004_P055_S16_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

69627270

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2267IQVP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples