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INDEXED
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SequenceFile
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IGVFFI3103XWRF
IGVFFI3103XWRF
released
validated
Json view
File Set
IGVFDS5103JQSX
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x4_NGS7_i1
md5sum
04189494791b2b08dea42f1ec0a194ff
Content MD5sum
d73d4f27bfeedbae0ea7a2cf7667fd69
File Size
1.2 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC4_S8_L007_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JCCLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
181915191
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3762JDVU
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7457JZZA
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.4 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3051KVYR
yaml
seqspec
seqspec of IGVFFI2205MNCT, IGVFFI8995AEJF, IGVFFI3103XWRF, IGVFFI7867TNIH
Ansuman Satpathy, Stanford
1.4 KB
validated