IGVFFI3099IQYU

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI3099IQYU/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3099IQYU",
    "aliases": [
        "bradley-bernstein:SS-LS_1682_R1",
        "buenrostro-bernstein:SS-LS_1682_R1"
    ],
    "assay_titles": [
        "SHARE-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping"
    },
    "content_md5sum": "038c000d482d23f93d4e59f4d28c208f",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-02-12T21:38:04.602370+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1601YMKN/",
        "accession": "IGVFDS1601YMKN",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/primary-cells/IGVFSM9691RJDN/",
                "accession": "IGVFSM9691RJDN",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0002371/",
                        "status": "released",
                        "term_name": "bone marrow"
                    }
                ],
                "status": "released",
                "summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (49 years)",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "single-cell RNA sequencing assay (SHARE-seq)"
    },
    "file_size": 615569779,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI3099IQYU/@@download/IGVFFI3099IQYU.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/matrix-files/IGVFFI3038HSVX/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jason-buenrostro/",
        "title": "Jason Buenrostro, Broad"
    },
    "loci_list_for": [],
    "maximum_read_length": 50,
    "md5sum": "280d69de81aac453559ce926de53b040",
    "mean_read_length": 50,
    "minimum_read_length": 50,
    "read_count": 29593395,
    "release_timestamp": "2025-01-14T17:56:02.770528+00:00",
    "s3_uri": "s3://igvf-files/2024/02/12/70f74893-8e2f-46c4-8d7e-97aad4c071ce/IGVFFI3099IQYU.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 1682,
    "status": "released",
    "submitted_by": {
        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
        "title": "Siddarth Wekhande"
    },
    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-1083_L4_SS-PKR-2_SS-V2-PLATE2-1st-THIRD_R1.fastq.gz",
    "submitter_comment": "This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.",
    "summary": "R1 reads from sequencing run 1682",
    "upload_status": "validated",
    "uuid": "70f74893-8e2f-46c4-8d7e-97aad4c071ce"
}