IGVFFI3093LRMO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9145ELFW(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G2_P069_L002_I1

md5sum

ed2ee3d53c85493d1428468cd10a7c15

Content MD5sum

30ea9260b41b30fffd67239bdd7e399f

File Size

1.0 GB

Submitted File Name

Multiome_ATAC_X051_G2_L002_P069_S10_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

138266582

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7066LYTG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples