IGVFFI3082ZEWW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7801WHYT(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X014_G1_P012_L004_R1

md5sum

3b369cddbf26d5a9ac946aac268bce09

Content MD5sum

cfb6cd86a9abdb4e794cbbeaebc7ff27

File Size

8.4 GB

Submitted File Name

Multiome_RNA_X014_G1_L001_P012_S27_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

401331831

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3402LHVF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples