IGVFFI3078AHRF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0831CAYJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G4_P059_L005_R1

md5sum

45bb145e0c41c1209aa55b567d43196a

Content MD5sum

319539e194b0f3577d8ef57e478f65eb

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP011_G4_L004_P059_S76_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

59098199

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9332LJBD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples