IGVFFI3075HVQR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9428HJNK(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G4_P029_L001_R1

md5sum

50c98e4f34a37e187b3909cb9cbd0a0d

Content MD5sum

1ae18cf9ecb6cbc5bd126e76d9b9076f

File Size

14 GB

Submitted File Name

Multiome_ATAC_X029_G4_L004_P029_S2_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

263641286

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8186WTLH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples