Home

IGVFFI3067OHXB

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0861MZYT(prime editing Variant-EFFECTS)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:240908-S029-PPIF_5SpliceSitePool-THP1-PE2_Exp6_NegControl-PCRrep1_I2
md5sum
b5ef78b36e26b753c24f4e5f57d6494e
Content MD5sum
d0511babe5873cd12bf702adde5a8325
File Size
12 MB
Submitted File Name
240908-S029-5splice-THP1-5splicesite_pool-Amp_PPIF_5splicesite-BioRep1-FFrep1-BinNeg-PCRrep1_S991_I2_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Illumina Read Type
I2
Index
TTACGCAC:AGGTGCGT
Average Read Length
8
Read Count
1678042

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
variant effects
variant effects
Jesse Engreitz, Stanford
pending

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford