IGVFFI3057OFDP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8318EODY(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G2_P043_L005_I1

md5sum

0b6ce9278e70673f9f350a10e530c6ed

Content MD5sum

48372c6aefdb0d90a37ca85af393651a

File Size

474 MB

Submitted File Name

Multiome_ATAC_X044_G2_L002_P043_S36_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65167028

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6240XBPL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples