IGVFFI3057MOAV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2682JDFY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X007_G6_P005_L001_R1

md5sum

5d5bfab730f8a645f2c518934c95f244

Content MD5sum

7efc3f7b26d4f1b977684b8927190ce5

File Size

13 GB

Submitted File Name

Multiome_ATAC_X007_G6_L006_P005_S6_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

257659268

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9600LBOY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) putamen tissue; Homo sapiens (male, 90 or above years) cerebellar cortex tissue; ... and 10 more samples