IGVFFI3031KYKG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6834GMBS(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G1_P060_L006_I1

md5sum

1552e1a26e1b6d84f1a94a5b269e8e28

Content MD5sum

4be8b2190f5d67f8ec769cd3b78f21c5

File Size

346 MB

Submitted File Name

Multiome_RNA_RP010_G1_L001_P060_S21_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50558559

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5451ZFAE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples