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INDEXED
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SequenceFile
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IGVFFI3025RYMZ
IGVFFI3025RYMZ
released
validated
Json view
File Set
IGVFDS3634TPOY
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_rna_10x1_NGS2_r1
md5sum
030d7438734ce6af2d57004353273ee9
Content MD5sum
a562ff6ccbb768cd0d7687977becfe30
File Size
7.5 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/GEX/FASTQ/GEX_1_CMAS_IGVF9_R_S7_L002_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHYLT3
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
396315824
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9678IFHW
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6188HAUP
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
220 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6838ZGFZ
yaml
seqspec
seqspec of IGVFFI2797UCDW, IGVFFI1038LZVL, IGVFFI3472WGIO, IGVFFI3025RYMZ
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford