IGVFFI3020LBOD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7453IBHQ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP021_G3_P067_L002_I1

md5sum

d024adcea556d93019abaff6fa852b3f

Content MD5sum

70132cf2960a0fab711eb8ee39fcc264

File Size

553 MB

Submitted File Name

Multiome_ATAC_RP021_G3_L003_P067_S1_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

73295925

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8178OHJY

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease; ... and 14 more samples