IGVFFI3018ZGSZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2559EFEW(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G2_P075_L004_I1

md5sum

e38a78faaeea2aac5c5fd7a0fc665852

Content MD5sum

8d461df201824dbc5b24fc69eda54ec3

File Size

927 MB

Submitted File Name

Multiome_ATAC_RP028_G2_L002_P075_S34_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

117867476

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1273LHSM

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples