IGVFFI3016CJJS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2994XKQR(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X045_G6_P045_L001_R2

md5sum

0b78e43f50967d72b08439b879a89e07

Content MD5sum

e16450307eb00531c6bb19c1f57e2e61

File Size

3.9 GB

Submitted File Name

Multiome_ATAC_X045_G6_L006_P045_S10_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

224262213

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0962IVEP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples