IGVFFI3012DHYF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1493FGGS(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X005_G8_P003_L004_R1

md5sum

6cd010bc99d5a30f697cf2c6f1f885eb

Content MD5sum

af512c024992faab4bfcc193d2ac23bd

File Size

5.7 GB

Submitted File Name

Multiome_ATAC_X005_G8_L008_P003_S26_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5TH7DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

180261348

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5971KNFX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples