IGVFFI3005NVEI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5301KQFA(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X027_G7_P028_L004_I2

md5sum

6c08ca3fe6aa0ea755517944abe425a7

Content MD5sum

7dfdda4ed98c188885c98a7571ef851a

File Size

1.6 GB

Submitted File Name

Multiome_RNA_X027_G7_L007_P028_S16_L004_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

272253339

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0591JAPP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples