IGVFFI3000GLBM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9058STTC(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G4_P057_L002_R2

md5sum

10ec4edac7285ff6c3b041b77ed19821

Content MD5sum

124fa9fdfcef3fa4a04e5d20094d7621

File Size

850 MB

Submitted File Name

Multiome_ATAC_RP009_G4_L004_P057_S12_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50058492

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9386ETNP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples