IGVFFI2991LXJR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2167DNAB(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G6_P037_L001_I1

md5sum

b33064510ce3dd808ba9415dc06dbc88

Content MD5sum

70cad18537a70b8209d985a5136788f4

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_X037_G6_L006_P037_S12_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

232827775

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6715JWBK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples