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INDEXED
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SequenceFile
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IGVFFI2989EVRF
IGVFFI2989EVRF
released
validated
Json view
File Set
IGVFDS6943MGVC
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp11_rna_10x4_NGS1_i2
md5sum
b2927d21865074b44b8b4d05a6cf50df
Content MD5sum
192094ad175d442e06d12b244ba268fc
File Size
3.5 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240424_IGVF11_McGinnis/GEX/FASTQ/GEX4_S25_L003_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
HGVFMDSX7
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
563724219
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8200CKYL
MultiplexedSample
GM25256 (WTC-11)
,
H7-hESC
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0153FJWJ
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
143 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9810ZIQO
yaml
seqspec
seqspec of IGVFFI2029TAMT, IGVFFI2989EVRF, IGVFFI5653UGYL, IGVFFI0807IMSL
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford